I just noticed if you insert a cue before another it seems to record in cue only and the data does not track.
For example Here I record cue 1, then 2 then 3 and tracking works as expected.
Here I recorded cue 1, then cue 0.5 then 0.25 and both 0.25 and .5 are recorded in cue only.
In MA2 you get a dialog asking what to do but the default is to track.